mega 6.0 software Search Results


megan v4.60.2 software  (Biotechnology Information)
90
Biotechnology Information megan v4.60.2 software
(A) A <t>MEGAN</t> tree, based on the output of BLASTX against the NCBI-nr database (E-value <10 −3 ), is shown. Transcripts lacking BLAST matches are assigned to the special node “no hits,” and those not assigned for reasons associated with the algorithm are denoted as “unassigned.” Bacteria are presented to the superkingdom level and Eukaryota are aligned at the kingdom to class level, except for Kinetoplastida, where the highest matching at the subclass level is shown. (B) Phylogenetic tree constructed upon a concatenation of three conserved proteins (α-tubulin, heat shock protein 70 and heat shock protein 90) consisting of 1,184 amino acids using the BEAST software. Elongation factor-1 (EF-1) was excluded due to its partial nature. The distance scale is given under the tree. (C) List of putative proteins with regions conserved across species. The respective sequencing reads have been deposited in GenBank (Accession numbers JU062373 through JU062376).
Megan V4.60.2 Software, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/megan v4.60.2 software/product/Biotechnology Information
Average 90 stars, based on 1 article reviews
megan v4.60.2 software - by Bioz Stars, 2026-04
90/100 stars
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bioedit version 7.2.5  (Bioedit Company)
90
Bioedit Company bioedit version 7.2.5
(A) A <t>MEGAN</t> tree, based on the output of BLASTX against the NCBI-nr database (E-value <10 −3 ), is shown. Transcripts lacking BLAST matches are assigned to the special node “no hits,” and those not assigned for reasons associated with the algorithm are denoted as “unassigned.” Bacteria are presented to the superkingdom level and Eukaryota are aligned at the kingdom to class level, except for Kinetoplastida, where the highest matching at the subclass level is shown. (B) Phylogenetic tree constructed upon a concatenation of three conserved proteins (α-tubulin, heat shock protein 70 and heat shock protein 90) consisting of 1,184 amino acids using the BEAST software. Elongation factor-1 (EF-1) was excluded due to its partial nature. The distance scale is given under the tree. (C) List of putative proteins with regions conserved across species. The respective sequencing reads have been deposited in GenBank (Accession numbers JU062373 through JU062376).
Bioedit Version 7.2.5, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/bioedit version 7.2.5/product/Bioedit Company
Average 90 stars, based on 1 article reviews
bioedit version 7.2.5 - by Bioz Stars, 2026-04
90/100 stars
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processor intel pentium iii, 1200 mega hertz  (Texas Instruments)
90
Texas Instruments processor intel pentium iii, 1200 mega hertz
(A) A <t>MEGAN</t> tree, based on the output of BLASTX against the NCBI-nr database (E-value <10 −3 ), is shown. Transcripts lacking BLAST matches are assigned to the special node “no hits,” and those not assigned for reasons associated with the algorithm are denoted as “unassigned.” Bacteria are presented to the superkingdom level and Eukaryota are aligned at the kingdom to class level, except for Kinetoplastida, where the highest matching at the subclass level is shown. (B) Phylogenetic tree constructed upon a concatenation of three conserved proteins (α-tubulin, heat shock protein 70 and heat shock protein 90) consisting of 1,184 amino acids using the BEAST software. Elongation factor-1 (EF-1) was excluded due to its partial nature. The distance scale is given under the tree. (C) List of putative proteins with regions conserved across species. The respective sequencing reads have been deposited in GenBank (Accession numbers JU062373 through JU062376).
Processor Intel Pentium Iii, 1200 Mega Hertz, supplied by Texas Instruments, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/processor intel pentium iii, 1200 mega hertz/product/Texas Instruments
Average 90 stars, based on 1 article reviews
processor intel pentium iii, 1200 mega hertz - by Bioz Stars, 2026-04
90/100 stars
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Image Search Results


(A) A MEGAN tree, based on the output of BLASTX against the NCBI-nr database (E-value <10 −3 ), is shown. Transcripts lacking BLAST matches are assigned to the special node “no hits,” and those not assigned for reasons associated with the algorithm are denoted as “unassigned.” Bacteria are presented to the superkingdom level and Eukaryota are aligned at the kingdom to class level, except for Kinetoplastida, where the highest matching at the subclass level is shown. (B) Phylogenetic tree constructed upon a concatenation of three conserved proteins (α-tubulin, heat shock protein 70 and heat shock protein 90) consisting of 1,184 amino acids using the BEAST software. Elongation factor-1 (EF-1) was excluded due to its partial nature. The distance scale is given under the tree. (C) List of putative proteins with regions conserved across species. The respective sequencing reads have been deposited in GenBank (Accession numbers JU062373 through JU062376).

Journal: PLoS ONE

Article Title: RNA-Seq-Based Metatranscriptomic and Microscopic Investigation Reveals Novel Metalloproteases of Neobodo sp. as Potential Virulence Factors for Soft Tunic Syndrome in Halocynthia roretzi

doi: 10.1371/journal.pone.0052379

Figure Lengend Snippet: (A) A MEGAN tree, based on the output of BLASTX against the NCBI-nr database (E-value <10 −3 ), is shown. Transcripts lacking BLAST matches are assigned to the special node “no hits,” and those not assigned for reasons associated with the algorithm are denoted as “unassigned.” Bacteria are presented to the superkingdom level and Eukaryota are aligned at the kingdom to class level, except for Kinetoplastida, where the highest matching at the subclass level is shown. (B) Phylogenetic tree constructed upon a concatenation of three conserved proteins (α-tubulin, heat shock protein 70 and heat shock protein 90) consisting of 1,184 amino acids using the BEAST software. Elongation factor-1 (EF-1) was excluded due to its partial nature. The distance scale is given under the tree. (C) List of putative proteins with regions conserved across species. The respective sequencing reads have been deposited in GenBank (Accession numbers JU062373 through JU062376).

Article Snippet: Taxonomic assignment was made based on the top BLASTX hits using the MEGAN v4.60.2 software ; this well-recognized tool for phylogenic classification of metagenomic and metatranscriptomic data uses the lowest common ancestor (LCA) algorithm to assign BLAST results to National Center for Biotechnology Information (NCBI) taxonomy.

Techniques: Bacteria, Construct, Software, Sequencing